J3_8OH6_021
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 8OH6|1|1|C|2732, 8OH6|1|1|C|2769
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_021 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0415
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8OH6|1|1|G|2623
8OH6|1|1|U|2624
8OH6|1|1|C|2625
*
8OH6|1|1|G|2726
8OH6|1|1|C|2727
8OH6|1|1|C|2728
8OH6|1|1|U|2729
8OH6|1|1|A|2730
8OH6|1|1|U|2731
8OH6|1|1|C|2732
8OH6|1|1|G|2733
8OH6|1|1|A|2734
8OH6|1|1|U|2735
8OH6|1|1|C|2736
8OH6|1|1|C|2737
*
8OH6|1|1|G|2765
8OH6|1|1|G|2766
8OH6|1|1|U|2767
8OH6|1|1|G|2768
8OH6|1|1|C|2769
8OH6|1|1|C|2770
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 2
- 60S ribosomal protein L21-A
- Chain AB
- 60S ribosomal protein L28
- Chain AP
- 60S ribosomal protein L42-B
- Chain y
- 60S ribosomal protein L18-A
Coloring options: