J3_8OH6_034
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AGAC*GGG*CAUAAU
- Length
- 13 nucleotides
- Bulged bases
- 8OH6|1|AS|U|618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_034 not in the Motif Atlas
- Homologous match to J3_8C3A_002
- Geometric discrepancy: 0.0792
- The information below is about J3_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_50081.1
- Basepair signature
- cWW-cSS-cWW-tSS-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8OH6|1|AS|A|436
8OH6|1|AS|G|437
8OH6|1|AS|A|438
8OH6|1|AS|C|439
*
8OH6|1|AS|G|488
8OH6|1|AS|G|489
8OH6|1|AS|G|490
*
8OH6|1|AS|C|616
8OH6|1|AS|A|617
8OH6|1|AS|U|618
8OH6|1|AS|A|619
8OH6|1|AS|A|620
8OH6|1|AS|U|621
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain BK
- Ribosomal protein L22
- Chain BZ
- 60S ribosomal protein L32
- Chain CA
- 60S ribosomal protein L33-A
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