J3_8OH6_044

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AGACG*UC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OH6_044 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.0606

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8OH6|1|AS|A|1650
8OH6|1|AS|G|1651
8OH6|1|AS|A|1652
8OH6|1|AS|C|1653
8OH6|1|AS|G|1654
*
8OH6|1|AS|U|1787
8OH6|1|AS|C|1788
*
8OH6|1|AS|G|1792
8OH6|1|AS|A|1793
8OH6|1|AS|A|1794
8OH6|1|AS|A|1795
8OH6|1|AS|A|1796
8OH6|1|AS|U|1797

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain CB

60S ribosomal protein L34-B

Chain CK

60S ribosomal protein L43-A