J3_8OH6_048
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8OH6|1|AS|A|2675, 8OH6|1|AS|A|2677
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_048 not in the Motif Atlas
- Homologous match to J3_8P9A_062
- Geometric discrepancy: 0.0765
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
8OH6|1|AS|C|2636
8OH6|1|AS|U|2637
8OH6|1|AS|C|2638
*
8OH6|1|AS|G|2662
8OH6|1|AS|A|2663
8OH6|1|AS|A|2664
*
8OH6|1|AS|U|2673
8OH6|1|AS|A|2674
8OH6|1|AS|A|2675
8OH6|1|AS|A|2676
8OH6|1|AS|A|2677
8OH6|1|AS|G|2678
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AT
- 5S ribosomal RNA; 5S rRNA
- Chain AZ
- Uncharacterized protein CaJ7.0206
- Chain BF
- 60S ribosomal protein L11-B
- Chain BO
- 60S ribosomal protein L21-A
- Chain CJ
- 60S ribosomal protein L42-B
- Chain CL
- 60S ribosomal protein CAALFM_C304810CA
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