J3_8OH6_060
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8OH6|1|B|A|1078
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_060 not in the Motif Atlas
- Homologous match to J3_8C3A_037
- Geometric discrepancy: 0.05
- The information below is about J3_8C3A_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_95208.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OH6|1|B|C|1022
8OH6|1|B|U|1023
8OH6|1|B|A|1024
*
8OH6|1|B|U|1064
8OH6|1|B|U|1065
8OH6|1|B|A|1066
8OH6|1|B|C|1067
8OH6|1|B|G|1068
*
8OH6|1|B|C|1075
8OH6|1|B|A|1076
8OH6|1|B|A|1077
8OH6|1|B|A|1078
8OH6|1|B|G|1079
Current chains
- Chain B
- 18S
Nearby chains
- Chain C
- 40S ribosomal protein S0
- Chain E
- Ribosomal protein S5
- Chain X
- 40S ribosomal protein S21
- Chain Y
- 40S ribosomal protein S22-A
- Chain c
- 40S ribosomal protein S26
- Chain d
- 40S ribosomal protein S27
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