J3_8OH6_061
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_061 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.0452
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OH6|1|B|C|1146
8OH6|1|B|C|1147
8OH6|1|B|A|1148
8OH6|1|B|G|1149
*
8OH6|1|B|C|1568
8OH6|1|B|U|1569
8OH6|1|B|A|1570
8OH6|1|B|G|1571
8OH6|1|B|U|1572
8OH6|1|B|A|1573
8OH6|1|B|A|1574
*
8OH6|1|B|U|1596
8OH6|1|B|G|1597
8OH6|1|B|A|1598
8OH6|1|B|U|1599
8OH6|1|B|U|1600
8OH6|1|B|A|1601
8OH6|1|B|C|1602
8OH6|1|B|G|1603
Current chains
- Chain B
- 18S
Nearby chains
- Chain H
- Ribosomal protein S7
- Chain S
- 40S ribosomal protein S16
- Chain e
- 40S ribosomal protein S28-B
Coloring options: