J3_8OH6_075
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AUCAG*CUAACUACUG*CAUUU
- Length
- 20 nucleotides
- Bulged bases
- 8OH6|1|CM|C|919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OH6_075 not in the Motif Atlas
- Homologous match to J3_8C3A_036
- Geometric discrepancy: 0.0435
- The information below is about J3_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08408.1
- Basepair signature
- cWW-F-F-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OH6|1|CM|A|866
8OH6|1|CM|U|867
8OH6|1|CM|C|868
8OH6|1|CM|A|869
8OH6|1|CM|G|870
*
8OH6|1|CM|C|912
8OH6|1|CM|U|913
8OH6|1|CM|A|914
8OH6|1|CM|A|915
8OH6|1|CM|C|916
8OH6|1|CM|U|917
8OH6|1|CM|A|918
8OH6|1|CM|C|919
8OH6|1|CM|U|920
8OH6|1|CM|G|921
*
8OH6|1|CM|C|928
8OH6|1|CM|A|929
8OH6|1|CM|U|930
8OH6|1|CM|U|931
8OH6|1|CM|U|932
Current chains
- Chain CM
- 18S
Nearby chains
- Chain CK
- 60S ribosomal protein L43-A
- Chain CO
- 40S ribosomal protein S1
- Chain DA
- 40S ribosomal protein S13
- Chain DB
- 40S ribosomal protein S14-A
- Chain DN
- 40S ribosomal protein S26
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