J3_8OHD_024
3D structure
- PDB id
- 8OHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUG*CCUUC*GCACCGCACGUUC
- Length
- 22 nucleotides
- Bulged bases
- 8OHD|1|5|U|4882, 8OHD|1|5|A|4938, 8OHD|1|5|C|4940, 8OHD|1|5|A|4943, 8OHD|1|5|C|4944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OHD|1|5|G|4751
8OHD|1|5|U|4752
8OHD|1|5|U|4753
8OHD|1|5|G|4754
*
8OHD|1|5|C|4879
8OHD|1|5|C|4880
8OHD|1|5|U|4881
8OHD|1|5|U|4882
8OHD|1|5|C|4883
*
8OHD|1|5|G|4936
8OHD|1|5|C|4937
8OHD|1|5|A|4938
8OHD|1|5|C|4939
8OHD|1|5|C|4940
8OHD|1|5|G|4941
8OHD|1|5|C|4942
8OHD|1|5|A|4943
8OHD|1|5|C|4944
8OHD|1|5|G|4945
8OHD|1|5|U|4946
8OHD|1|5|U|4947
8OHD|1|5|C|4948
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LE
- 60S ribosomal protein L6
- Chain LM
- 60S ribosomal protein L14
- Chain LO
- 60S ribosomal protein L13a
- Chain Lf
- 60S ribosomal protein L35a
Coloring options: