J3_8OI5_010

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAG*CGUAG*UCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OI5_010 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.0619

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8OI5|1|1|U|825
8OI5|1|1|A|826
8OI5|1|1|G|827
*
8OI5|1|1|C|859
8OI5|1|1|G|860
8OI5|1|1|U|861
8OI5|1|1|A|862
8OI5|1|1|G|863
*
8OI5|1|1|U|888
8OI5|1|1|C|889
8OI5|1|1|G|890
8OI5|1|1|A|891

Current chains

Chain 1

25S

Nearby chains

Chain AH

60S ribosomal protein L34-B

Chain AQ

60S ribosomal protein L43-A

Chain j

60S ribosomal protein L2-B

Chain z

60S ribosomal protein L19-A