J3_8OI5_016
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAC*GUAACU*AG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OI5_016 not in the Motif Atlas
- Homologous match to J3_8P9A_057
- Geometric discrepancy: 0.1666
- The information below is about J3_8P9A_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OI5|1|1|C|1627
8OI5|1|1|A|1628
8OI5|1|1|C|1629
*
8OI5|1|1|G|1636
8OI5|1|1|U|1637
8OI5|1|1|A|1638
8OI5|1|1|A|1639
8OI5|1|1|C|1640
8OI5|1|1|U|1641
*
8OI5|1|1|A|1806
8OI5|1|1|G|1807
Current chains
- Chain 1
- 25S
Nearby chains
- Chain AA
- 60S ribosomal protein L27
- Chain AH
- 60S ribosomal protein L34-B
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