J3_8OI5_017
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGACG*UC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OI5_017 not in the Motif Atlas
- Homologous match to J3_8C3A_055
- Geometric discrepancy: 0.0715
- The information below is about J3_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10980.1
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OI5|1|1|A|1650
8OI5|1|1|G|1651
8OI5|1|1|A|1652
8OI5|1|1|C|1653
8OI5|1|1|G|1654
*
8OI5|1|1|U|1787
8OI5|1|1|C|1788
*
8OI5|1|1|G|1792
8OI5|1|1|A|1793
8OI5|1|1|A|1794
8OI5|1|1|A|1795
8OI5|1|1|A|1796
8OI5|1|1|U|1797
Current chains
- Chain 1
- 25S
Nearby chains
- Chain AH
- 60S ribosomal protein L34-B
- Chain AQ
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-B
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