J3_8OI5_023

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUUAGAUG*CAUAGCAGG*CGGAUAGCAAUGUCAACA

Length

36 nucleotides

Bulged bases

8OI5|1|1|A|3142, 8OI5|1|1|G|3143, 8OI5|1|1|A|3180, 8OI5|1|1|G|3181, 8OI5|1|1|G|3184, 8OI5|1|1|A|3233, 8OI5|1|1|A|3235, 8OI5|1|1|C|3237

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OI5|1|1|U|3138
8OI5|1|1|U|3139
8OI5|1|1|U|3140
8OI5|1|1|U|3141
8OI5|1|1|A|3142
8OI5|1|1|G|3143
8OI5|1|1|A|3144
8OI5|1|1|U|3145
8OI5|1|1|G|3146
*
8OI5|1|1|C|3177
8OI5|1|1|A|3178
8OI5|1|1|U|3179
8OI5|1|1|A|3180
8OI5|1|1|G|3181
8OI5|1|1|C|3182
8OI5|1|1|A|3183
8OI5|1|1|G|3184
8OI5|1|1|G|3185
*
8OI5|1|1|C|3230
8OI5|1|1|G|3231
8OI5|1|1|G|3232
8OI5|1|1|A|3233
8OI5|1|1|U|3234
8OI5|1|1|A|3235
8OI5|1|1|G|3236
8OI5|1|1|C|3237
8OI5|1|1|A|3238
8OI5|1|1|A|3239
8OI5|1|1|U|3240
8OI5|1|1|G|3241
8OI5|1|1|U|3242
8OI5|1|1|C|3243
8OI5|1|1|A|3244
8OI5|1|1|A|3245
8OI5|1|1|C|3246
8OI5|1|1|A|3247

Current chains

Chain 1

25S

Nearby chains

Chain AG

60S ribosomal protein L33-A

Chain n

60S ribosomal protein L6

Chain u

60S ribosomal protein L14-B

Chain w

Ribosomal protein L13

Chain x

Ribosomal protein L22