J3_8OI5_057

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OI5_057 not in the Motif Atlas

Homologous match to J3_8C3A_035

Geometric discrepancy: 0.0676

The information below is about J3_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_00811.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

8OI5|1|B|A|745
8OI5|1|B|G|746
8OI5|1|B|A|747
8OI5|1|B|G|748
*
8OI5|1|B|C|758
8OI5|1|B|A|759
8OI5|1|B|G|760
*
8OI5|1|B|U|769
8OI5|1|B|C|770
8OI5|1|B|G|771
8OI5|1|B|A|772
8OI5|1|B|A|773
8OI5|1|B|U|774

Current chains

Chain B

18S

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

Ribosomal protein S4

Chain a

40S ribosomal protein S24