J3_8OIN_004

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAUAAUC*GAUAGACCUUAC*GAAAG

Length

25 nucleotides

Bulged bases

8OIN|1|AA|U|580, 8OIN|1|AA|A|581, 8OIN|1|AA|A|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIN|1|AA|C|560
8OIN|1|AA|U|561
8OIN|1|AA|A|562
8OIN|1|AA|U|563
8OIN|1|AA|A|564
8OIN|1|AA|A|565
8OIN|1|AA|U|566
8OIN|1|AA|C|567
*
8OIN|1|AA|G|578
8OIN|1|AA|A|579
8OIN|1|AA|U|580
8OIN|1|AA|A|581
8OIN|1|AA|G|582
8OIN|1|AA|A|583
8OIN|1|AA|C|584
8OIN|1|AA|C|585
8OIN|1|AA|U|586
8OIN|1|AA|U|587
8OIN|1|AA|A|588
8OIN|1|AA|C|589
*
8OIN|1|AA|G|706
8OIN|1|AA|A|707
8OIN|1|AA|A|708
8OIN|1|AA|A|709
8OIN|1|AA|G|710

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AH

Mitochondrial ribosomal protein S10

Chain AK

Mitochondrial ribosomal protein S14

Chain Aa

Peptide chain release factor 1, mitochondrial