J3_8OIN_009

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CCAAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OIN_009 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.2064

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8OIN|1|B8|C|266
8OIN|1|B8|A|267
8OIN|1|B8|G|268
*
8OIN|1|B8|C|279
8OIN|1|B8|C|280
8OIN|1|B8|A|281
8OIN|1|B8|A|282
8OIN|1|B8|C|283
*
8OIN|1|B8|G|307
8OIN|1|B8|A|308
8OIN|1|B8|A|309
8OIN|1|B8|G|310

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BL

uL2m

Chain Bm

Mitochondrial ribosomal protein L37