J3_8OIN_023
3D structure
- PDB id
- 8OIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAACAUACUAAACAAAUACAAAAAUACACCAAAAUAAAAUA*UCACCUAACA*UUAUCCUG
- Length
- 59 nucleotides
- Bulged bases
- 8OIN|1|B8|A|20, 8OIN|1|B8|C|21, 8OIN|1|B8|U|22, 8OIN|1|B8|A|31, 8OIN|1|B8|A|33, 8OIN|1|B8|A|39, 8OIN|1|B8|C|40, 8OIN|1|B8|A|41, 8OIN|1|B8|U|48, 8OIN|1|B8|A|68, 8OIN|1|B8|C|69, 8OIN|1|B8|U|96, 8OIN|1|B8|U|101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIN|1|B8|C|14
8OIN|1|B8|A|15
8OIN|1|B8|A|16
8OIN|1|B8|C|17
8OIN|1|B8|A|18
8OIN|1|B8|U|19
8OIN|1|B8|A|20
8OIN|1|B8|C|21
8OIN|1|B8|U|22
8OIN|1|B8|A|23
8OIN|1|B8|A|24
8OIN|1|B8|A|25
8OIN|1|B8|C|26
8OIN|1|B8|A|27
8OIN|1|B8|A|28
8OIN|1|B8|A|29
8OIN|1|B8|U|30
8OIN|1|B8|A|31
8OIN|1|B8|C|32
8OIN|1|B8|A|33
8OIN|1|B8|A|34
8OIN|1|B8|A|35
8OIN|1|B8|A|36
8OIN|1|B8|A|37
8OIN|1|B8|U|38
8OIN|1|B8|A|39
8OIN|1|B8|C|40
8OIN|1|B8|A|41
8OIN|1|B8|C|42
8OIN|1|B8|C|43
8OIN|1|B8|A|44
8OIN|1|B8|A|45
8OIN|1|B8|A|46
8OIN|1|B8|A|47
8OIN|1|B8|U|48
8OIN|1|B8|A|49
8OIN|1|B8|A|50
8OIN|1|B8|A|51
8OIN|1|B8|A|52
8OIN|1|B8|U|53
8OIN|1|B8|A|54
*
8OIN|1|B8|U|61
8OIN|1|B8|C|62
8OIN|1|B8|A|63
8OIN|1|B8|C|64
8OIN|1|B8|C|65
8OIN|1|B8|U|66
8OIN|1|B8|A|67
8OIN|1|B8|A|68
8OIN|1|B8|C|69
8OIN|1|B8|A|70
*
8OIN|1|B8|U|95
8OIN|1|B8|U|96
8OIN|1|B8|A|97
8OIN|1|B8|U|98
8OIN|1|B8|C|99
8OIN|1|B8|C|100
8OIN|1|B8|U|101
8OIN|1|B8|G|102
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BB
- 39S ribosomal protein L23, mitochondrial
- Chain BC
- uL24m
- Chain BE
- Mitochondrial ribosomal protein L28
- Chain BF
- Mitochondrial ribosomal protein L47
- Chain BJ
- Mitochondrial ribosomal protein L34
- Chain BK
- Mitochondrial ribosomal protein L35
- Chain BN
- Mitochondrial ribosomal protein L4
- Chain BO
- Mitochondrial ribosomal protein L9
- Chain BT
- 39S ribosomal protein L15, mitochondrial
- Chain Bg
- mL64
- Chain Bm
- Mitochondrial ribosomal protein L37
- Chain Bq
- Mitochondrial ribosomal protein L41
- Chain Bz
- Mitochondrial ribosomal protein L51
Coloring options: