J3_8OIP_011

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CACC*GCAGUAA*UGAAUAAG

Length

19 nucleotides

Bulged bases

8OIP|1|AA|A|822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OIP_011 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.4741

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8OIP|1|AA|C|542
8OIP|1|AA|A|543
8OIP|1|AA|C|544
8OIP|1|AA|C|545
*
8OIP|1|AA|G|788
8OIP|1|AA|C|789
8OIP|1|AA|A|790
8OIP|1|AA|G|791
8OIP|1|AA|U|792
8OIP|1|AA|A|793
8OIP|1|AA|A|794
*
8OIP|1|AA|U|816
8OIP|1|AA|G|817
8OIP|1|AA|A|818
8OIP|1|AA|A|819
8OIP|1|AA|U|820
8OIP|1|AA|A|821
8OIP|1|AA|A|822
8OIP|1|AA|G|823

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AF

Mitochondrial ribosomal protein S7

Chain Ac

Coiled-coil-helix-coiled-coil-helix domain containing 1

Chain Ag

uS9m