J3_8OIQ_005

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CACC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8OIQ|1|B8|A|1341, 8OIQ|1|B8|C|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OIQ_005 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.13

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8OIQ|1|B8|C|1340
8OIQ|1|B8|A|1341
8OIQ|1|B8|C|1342
8OIQ|1|B8|C|1343
*
8OIQ|1|B8|G|1368
8OIQ|1|B8|U|1369
8OIQ|1|B8|U|1370
*
8OIQ|1|B8|A|1384
8OIQ|1|B8|U|1385
8OIQ|1|B8|U|1386
8OIQ|1|B8|A|1387
8OIQ|1|B8|A|1388
8OIQ|1|B8|A|1389
8OIQ|1|B8|G|1390

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BS

Mitochondrial ribosomal protein L14

Chain Be

Mitochondrial ribosomal protein L57

Chain Bh

Mitochondrial ribosomal protein S18A