J3_8OIR_008

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAG*CAAUAGAUAUAGUAC*GGAAAG

Length

25 nucleotides

Bulged bases

8OIR|1|B8|U|104

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIR|1|B8|C|8
8OIR|1|B8|U|9
8OIR|1|B8|A|10
8OIR|1|B8|G|11
*
8OIR|1|B8|C|101
8OIR|1|B8|A|102
8OIR|1|B8|A|103
8OIR|1|B8|U|104
8OIR|1|B8|A|105
8OIR|1|B8|G|106
8OIR|1|B8|A|107
8OIR|1|B8|U|108
8OIR|1|B8|A|109
8OIR|1|B8|U|110
8OIR|1|B8|A|111
8OIR|1|B8|G|112
8OIR|1|B8|U|113
8OIR|1|B8|A|114
8OIR|1|B8|C|115
*
8OIR|1|B8|G|122
8OIR|1|B8|G|123
8OIR|1|B8|A|124
8OIR|1|B8|A|125
8OIR|1|B8|A|126
8OIR|1|B8|G|127

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BB

39S ribosomal protein L23, mitochondrial

Chain BC

39S ribosomal protein L24, mitochondrial

Chain BF

39S ribosomal protein L47, mitochondrial

Chain BJ

39S ribosomal protein L34, mitochondrial

Chain BN

39S ribosomal protein L4, mitochondrial

Chain BY

39S ribosomal protein L20, mitochondrial

Chain Bq

39S ribosomal protein L41, mitochondrial

Chain Bt

39S ribosomal protein L44, mitochondrial

Chain Bu

39S ribosomal protein L45, mitochondrial

Chain Bz

39S ribosomal protein L51, mitochondrial