J3_8OIR_010

3D structure

PDB id

8OIR (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S human mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OIR_010 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1278

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8OIR|1|B8|C|260
8OIR|1|B8|A|261
8OIR|1|B8|G|262
*
8OIR|1|B8|C|272
8OIR|1|B8|A|273
8OIR|1|B8|C|274
8OIR|1|B8|A|275
8OIR|1|B8|C|276
*
8OIR|1|B8|G|300
8OIR|1|B8|A|301
8OIR|1|B8|A|302
8OIR|1|B8|G|303

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BL

39S ribosomal protein L2, mitochondrial

Chain Bm

39S ribosomal protein L37, mitochondrial