J3_8OIR_015
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAAACCCACUCCACCUUACUACCAGACAACCUUAGCCA*UUACCCAAAUA*UUGAAACCUG
- Length
- 60 nucleotides
- Bulged bases
- 8OIR|1|B8|C|19, 8OIR|1|B8|C|23, 8OIR|1|B8|C|29, 8OIR|1|B8|U|31, 8OIR|1|B8|C|37, 8OIR|1|B8|A|38, 8OIR|1|B8|C|45, 8OIR|1|B8|U|46, 8OIR|1|B8|C|63, 8OIR|1|B8|C|64, 8OIR|1|B8|A|65, 8OIR|1|B8|C|94
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIR|1|B8|C|14
8OIR|1|B8|C|15
8OIR|1|B8|A|16
8OIR|1|B8|A|17
8OIR|1|B8|A|18
8OIR|1|B8|C|19
8OIR|1|B8|C|20
8OIR|1|B8|C|21
8OIR|1|B8|A|22
8OIR|1|B8|C|23
8OIR|1|B8|U|24
8OIR|1|B8|C|25
8OIR|1|B8|C|26
8OIR|1|B8|A|27
8OIR|1|B8|C|28
8OIR|1|B8|C|29
8OIR|1|B8|U|30
8OIR|1|B8|U|31
8OIR|1|B8|A|32
8OIR|1|B8|C|33
8OIR|1|B8|U|34
8OIR|1|B8|A|35
8OIR|1|B8|C|36
8OIR|1|B8|C|37
8OIR|1|B8|A|38
8OIR|1|B8|G|39
8OIR|1|B8|A|40
8OIR|1|B8|C|41
8OIR|1|B8|A|42
8OIR|1|B8|A|43
8OIR|1|B8|C|44
8OIR|1|B8|C|45
8OIR|1|B8|U|46
8OIR|1|B8|U|47
8OIR|1|B8|A|48
8OIR|1|B8|G|49
8OIR|1|B8|C|50
8OIR|1|B8|C|51
8OIR|1|B8|A|52
*
8OIR|1|B8|U|59
8OIR|1|B8|U|60
8OIR|1|B8|A|61
8OIR|1|B8|C|62
8OIR|1|B8|C|63
8OIR|1|B8|C|64
8OIR|1|B8|A|65
8OIR|1|B8|A|66
8OIR|1|B8|A|67
8OIR|1|B8|U|68
8OIR|1|B8|A|69
*
8OIR|1|B8|U|88
8OIR|1|B8|U|89
8OIR|1|B8|G|90
8OIR|1|B8|A|91
8OIR|1|B8|A|92
8OIR|1|B8|A|93
8OIR|1|B8|C|94
8OIR|1|B8|C|95
8OIR|1|B8|U|96
8OIR|1|B8|G|97
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BB
- 39S ribosomal protein L23, mitochondrial
- Chain BC
- 39S ribosomal protein L24, mitochondrial
- Chain BE
- 39S ribosomal protein L28, mitochondrial
- Chain BF
- 39S ribosomal protein L47, mitochondrial
- Chain BJ
- 39S ribosomal protein L34, mitochondrial
- Chain BK
- 39S ribosomal protein L35, mitochondrial
- Chain BN
- 39S ribosomal protein L4, mitochondrial
- Chain BO
- 39S ribosomal protein L9, mitochondrial
- Chain BT
- 39S ribosomal protein L15, mitochondrial
- Chain Bg
- Growth arrest and DNA damage-inducible proteins-interacting protein 1
- Chain Bm
- 39S ribosomal protein L37, mitochondrial
- Chain Bq
- 39S ribosomal protein L41, mitochondrial
- Chain Bz
- 39S ribosomal protein L51, mitochondrial
Coloring options: