J3_8OIR_016
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAAAUUUAACACCCAU*AUUAAG*CAACACCCACUACCUAAAAAAUCCCAAACAUAUAACU
- Length
- 59 nucleotides
- Bulged bases
- 8OIR|1|B8|A|484, 8OIR|1|B8|U|489, 8OIR|1|B8|C|549, 8OIR|1|B8|C|551, 8OIR|1|B8|C|554, 8OIR|1|B8|U|563, 8OIR|1|B8|C|564, 8OIR|1|B8|A|571, 8OIR|1|B8|U|572, 8OIR|1|B8|A|573, 8OIR|1|B8|U|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIR|1|B8|A|483
8OIR|1|B8|A|484
8OIR|1|B8|A|485
8OIR|1|B8|A|486
8OIR|1|B8|U|487
8OIR|1|B8|U|488
8OIR|1|B8|U|489
8OIR|1|B8|A|490
8OIR|1|B8|A|491
8OIR|1|B8|C|492
8OIR|1|B8|A|493
8OIR|1|B8|C|494
8OIR|1|B8|C|495
8OIR|1|B8|C|496
8OIR|1|B8|A|497
8OIR|1|B8|U|498
*
8OIR|1|B8|A|522
8OIR|1|B8|U|523
8OIR|1|B8|U|524
8OIR|1|B8|A|525
8OIR|1|B8|A|526
8OIR|1|B8|G|527
*
8OIR|1|B8|C|542
8OIR|1|B8|A|543
8OIR|1|B8|A|544
8OIR|1|B8|C|545
8OIR|1|B8|A|546
8OIR|1|B8|C|547
8OIR|1|B8|C|548
8OIR|1|B8|C|549
8OIR|1|B8|A|550
8OIR|1|B8|C|551
8OIR|1|B8|U|552
8OIR|1|B8|A|553
8OIR|1|B8|C|554
8OIR|1|B8|C|555
8OIR|1|B8|U|556
8OIR|1|B8|A|557
8OIR|1|B8|A|558
8OIR|1|B8|A|559
8OIR|1|B8|A|560
8OIR|1|B8|A|561
8OIR|1|B8|A|562
8OIR|1|B8|U|563
8OIR|1|B8|C|564
8OIR|1|B8|C|565
8OIR|1|B8|C|566
8OIR|1|B8|A|567
8OIR|1|B8|A|568
8OIR|1|B8|A|569
8OIR|1|B8|C|570
8OIR|1|B8|A|571
8OIR|1|B8|U|572
8OIR|1|B8|A|573
8OIR|1|B8|U|574
8OIR|1|B8|A|575
8OIR|1|B8|A|576
8OIR|1|B8|C|577
8OIR|1|B8|U|578
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BM
- 39S ribosomal protein L3, mitochondrial
- Chain BP
- 39S ribosomal protein L10, mitochondrial
- Chain BQ
- 39S ribosomal protein L11, mitochondrial
- Chain BR
- 39S ribosomal protein L13, mitochondrial
- Chain BU
- 39S ribosomal protein L16, mitochondrial
- Chain BY
- 39S ribosomal protein L20, mitochondrial
- Chain BZ
- 39S ribosomal protein L21, mitochondrial
- Chain Ba
- 39S ribosomal protein L52, mitochondrial
- Chain Bb
- 39S ribosomal protein L53, mitochondrial
- Chain Bc
- 39S ribosomal protein L54, mitochondrial
- Chain Be
- Ribosomal protein 63, mitochondrial
- Chain Bh
- 39S ribosomal protein S18a, mitochondrial
- Chain Bl
- 39S ribosomal protein L36, mitochondrial
Coloring options: