J3_8OIT_006

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8OIT|1|B8|A|1335, 8OIT|1|B8|U|1336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OIT_006 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0989

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

8OIT|1|B8|C|1334
8OIT|1|B8|A|1335
8OIT|1|B8|U|1336
8OIT|1|B8|C|1337
*
8OIT|1|B8|G|1362
8OIT|1|B8|U|1363
8OIT|1|B8|U|1364
*
8OIT|1|B8|A|1378
8OIT|1|B8|U|1379
8OIT|1|B8|U|1380
8OIT|1|B8|A|1381
8OIT|1|B8|A|1382
8OIT|1|B8|A|1383
8OIT|1|B8|G|1384

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BM

39S ribosomal protein L3, mitochondrial

Chain BS

39S ribosomal protein L14, mitochondrial

Chain Bh

39S ribosomal protein S18a, mitochondrial