J3_8OJ5_016

3D structure

PDB id

8OJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8OJ5|1|5|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OJ5|1|5|C|451
8OJ5|1|5|A|452
8OJ5|1|5|G|453
8OJ5|1|5|U|454
8OJ5|1|5|C|455
*
8OJ5|1|5|G|701
8OJ5|1|5|U|702
8OJ5|1|5|G|703
8OJ5|1|5|C|704
8OJ5|1|5|G|705
*
8OJ5|1|5|C|1292
8OJ5|1|5|G|1293
8OJ5|1|5|A|1294
8OJ5|1|5|C|1295
8OJ5|1|5|G|1296

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a

Chain Lr

60S ribosomal protein L28