J3_8OJ8_001

3D structure

PDB id

8OJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 1 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8OJ8|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OJ8|1|5|C|112
8OJ8|1|5|A|113
8OJ8|1|5|G|114
8OJ8|1|5|C|115
8OJ8|1|5|G|116
*
8OJ8|1|5|C|155
8OJ8|1|5|G|156
8OJ8|1|5|U|157
8OJ8|1|5|A|158
8OJ8|1|5|C|159
8OJ8|1|5|G|160
*
8OJ8|1|5|C|275
8OJ8|1|5|C|276
8OJ8|1|5|G|277
8OJ8|1|5|G|278

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36