J3_8OO0_007
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OO0_007 not in the Motif Atlas
- Homologous match to J3_5TBW_012
- Geometric discrepancy: 0.1477
- The information below is about J3_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8OO0|1|1|A|2395
8OO0|1|1|U|2396
8OO0|1|1|U|2397
8OO0|1|1|G|2398
*
8OO0|1|1|C|2475
8OO0|1|1|U|2476
8OO0|1|1|U|2477
8OO0|1|1|A|2478
8OO0|1|1|U|2479
8OO0|1|1|U|2480
*
8OO0|1|1|A|2549
8OO0|1|1|A|2550
8OO0|1|1|G|2551
8OO0|1|1|A|2552
8OO0|1|1|C|2553
8OO0|1|1|A|2554
8OO0|1|1|U|2555
8OO0|1|1|U|2556
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LG
- 60S ribosomal protein L8
- Chain LN
- Ribosomal protein L15
- Chain Li
- 60S ribosomal protein L36
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