J3_8OO0_013
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUA*UUACG*CAAAA
- Length
- 13 nucleotides
- Bulged bases
- 8OO0|1|2|A|1090
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OO0_013 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.1839
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OO0|1|2|U|1035
8OO0|1|2|U|1036
8OO0|1|2|A|1037
*
8OO0|1|2|U|1076
8OO0|1|2|U|1077
8OO0|1|2|A|1078
8OO0|1|2|C|1079
8OO0|1|2|G|1080
*
8OO0|1|2|C|1087
8OO0|1|2|A|1088
8OO0|1|2|A|1089
8OO0|1|2|A|1090
8OO0|1|2|A|1091
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein S0
- Chain SV
- 40S ribosomal protein S21-like protein
- Chain SW
- 40S ribosomal protein S22-like protein
- Chain Sa
- 40S ribosomal protein S26
- Chain Sb
- Ribosomal protein s27-like protein
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