J3_8OO0_020
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8OO0|1|2|U|1469, 8OO0|1|2|G|1535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OO0_020 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.2851
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OO0|1|2|C|1466
8OO0|1|2|A|1467
8OO0|1|2|C|1468
8OO0|1|2|U|1469
8OO0|1|2|G|1470
*
8OO0|1|2|C|1529
8OO0|1|2|G|1530
8OO0|1|2|U|1531
8OO0|1|2|G|1532
8OO0|1|2|C|1533
8OO0|1|2|U|1534
8OO0|1|2|G|1535
8OO0|1|2|G|1536
*
8OO0|1|2|C|1567
8OO0|1|2|G|1568
8OO0|1|2|A|1569
8OO0|1|2|G|1570
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SF
- 40S ribosomal protein s5-like protein
- Chain SS
- Putative ribosomal protein
- Chain ST
- 40S ribosomal protein S19-like protein
- Chain SZ
- 40S ribosomal protein S25
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