J3_8OO0_028
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUAG*CGCAG*UCAAAU
- Length
- 15 nucleotides
- Bulged bases
- 8OO0|1|1|A|878
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OO0_028 not in the Motif Atlas
- Homologous match to J3_8P9A_050
- Geometric discrepancy: 0.1822
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8OO0|1|1|A|810
8OO0|1|1|U|811
8OO0|1|1|A|812
8OO0|1|1|G|813
*
8OO0|1|1|C|845
8OO0|1|1|G|846
8OO0|1|1|C|847
8OO0|1|1|A|848
8OO0|1|1|G|849
*
8OO0|1|1|U|874
8OO0|1|1|C|875
8OO0|1|1|A|876
8OO0|1|1|A|877
8OO0|1|1|A|878
8OO0|1|1|U|879
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LR
- Ribosomal protein L19
- Chain Lg
- Ribosomal protein l34-like protein
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