J3_8OO0_038

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8OO0|1|2|A|46, 8OO0|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OO0_038 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1432

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8OO0|1|2|A|41
8OO0|1|2|G|42
8OO0|1|2|A|43
8OO0|1|2|U|44
8OO0|1|2|U|45
8OO0|1|2|A|46
8OO0|1|2|A|47
8OO0|1|2|G|48
*
8OO0|1|2|C|428
8OO0|1|2|G|429
8OO0|1|2|C|430
8OO0|1|2|G|431
8OO0|1|2|C|432
8OO0|1|2|A|433
8OO0|1|2|A|434
8OO0|1|2|A|435
8OO0|1|2|U|436
*
8OO0|1|2|A|461
8OO0|1|2|G|462
8OO0|1|2|U|463

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein s23-like protein