J3_8OO0_042
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUCUUAG*CGAGAC*GCAAUAA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OO0_042 not in the Motif Atlas
- Homologous match to J3_8C3A_042
- Geometric discrepancy: 0.3103
- The information below is about J3_8C3A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67213.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8OO0|1|2|U|1279
8OO0|1|2|U|1280
8OO0|1|2|C|1281
8OO0|1|2|U|1282
8OO0|1|2|U|1283
8OO0|1|2|A|1284
8OO0|1|2|G|1285
*
8OO0|1|2|C|1324
8OO0|1|2|G|1325
8OO0|1|2|A|1326
8OO0|1|2|G|1327
8OO0|1|2|A|1328
8OO0|1|2|C|1329
*
8OO0|1|2|G|1415
8OO0|1|2|C|1416
8OO0|1|2|A|1417
8OO0|1|2|A|1418
8OO0|1|2|U|1419
8OO0|1|2|A|1420
8OO0|1|2|A|1421
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2-like protein
- Chain SD
- 40S ribosomal protein S3-like protein
- Chain SQ
- 40S ribosomal protein S16-like protein
- Chain SR
- 40S ribosomal protein S17-like protein
- Chain SU
- 40S ribosomal protein S20-like protein
- Chain Sd
- 40S ribosomal protein S29
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