J3_8OVE_001
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CCAUG*UCUUCACG*CUUGGAG
- Length
- 20 nucleotides
- Bulged bases
- 8OVE|1|AA|U|1481, 8OVE|1|AA|U|1482, 8OVE|1|AA|G|1496
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OVE|1|AA|C|1314
8OVE|1|AA|C|1315
8OVE|1|AA|A|1316
8OVE|1|AA|U|1317
8OVE|1|AA|G|1318
*
8OVE|1|AA|U|1479
8OVE|1|AA|C|1480
8OVE|1|AA|U|1481
8OVE|1|AA|U|1482
8OVE|1|AA|C|1483
8OVE|1|AA|A|1484
8OVE|1|AA|C|1485
8OVE|1|AA|G|1486
*
8OVE|1|AA|C|1493
8OVE|1|AA|U|1494
8OVE|1|AA|U|1495
8OVE|1|AA|G|1496
8OVE|1|AA|G|1497
8OVE|1|AA|A|1498
8OVE|1|AA|G|1499
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain AC
- 40S ribosomal protein SA
- Chain AG
- 40S ribosomal protein S13, putative
- Chain AJ
- 40S ribosomal protein S15a, putative
- Chain AR
- 40S ribosomal protein S21, putative
- Chain AV
- 40S ribosomal protein S26
- Chain AW
- 40S ribosomal protein S27, putative
Coloring options: