J3_8OVE_002

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAGA*UCUCGUAG*CGAUUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OVE|1|AA|C|1566
8OVE|1|AA|A|1567
8OVE|1|AA|A|1568
8OVE|1|AA|G|1569
8OVE|1|AA|A|1570
*
8OVE|1|AA|U|2075
8OVE|1|AA|C|2076
8OVE|1|AA|U|2077
8OVE|1|AA|C|2078
8OVE|1|AA|G|2079
8OVE|1|AA|U|2080
8OVE|1|AA|A|2081
8OVE|1|AA|G|2082
*
8OVE|1|AA|C|2104
8OVE|1|AA|G|2105
8OVE|1|AA|A|2106
8OVE|1|AA|U|2107
8OVE|1|AA|U|2108
8OVE|1|AA|A|2109
8OVE|1|AA|C|2110
8OVE|1|AA|G|2111

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A2

40S ribosomal protein S5, putative

Chain AK

40S ribosomal protein S16, putative

Chain AZ

40S ribosomal protein S33, putative