J3_8OVE_009

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGUCG*CUCC*GGGAAAC

Length

17 nucleotides

Bulged bases

8OVE|1|AA|A|2008, 8OVE|1|AA|A|2009

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OVE|1|AA|G|1955
8OVE|1|AA|A|1956
8OVE|1|AA|G|1957
8OVE|1|AA|U|1958
8OVE|1|AA|C|1960
8OVE|1|AA|G|1961
*
8OVE|1|AA|C|1982
8OVE|1|AA|U|1983
8OVE|1|AA|C|1984
8OVE|1|AA|C|1985
*
8OVE|1|AA|G|2004
8OVE|1|AA|G|2005
8OVE|1|AA|G|2006
8OVE|1|AA|A|2007
8OVE|1|AA|A|2008
8OVE|1|AA|A|2009
8OVE|1|AA|C|2010

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A8

Putative ribosomal protein S29

Chain AD

40S ribosomal protein S10, putative

Chain AQ

Ribosomal protein S10

Chain AX

40S ribosomal protein S3, putative