J3_8OVE_028
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAG*CGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8OVE|1|BA|U|413, 8OVE|1|BA|A|421, 8OVE|1|BC|U|22
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_028 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0885
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
8OVE|1|BA|C|410
8OVE|1|BA|G|411
8OVE|1|BA|A|412
8OVE|1|BA|U|413
8OVE|1|BA|A|414
8OVE|1|BA|G|415
8OVE|1|BA|C|416
8OVE|1|BA|G|417
8OVE|1|BA|A|418
8OVE|1|BA|A|419
8OVE|1|BA|C|420
8OVE|1|BA|A|421
8OVE|1|BA|A|422
8OVE|1|BA|G|423
8OVE|1|BA|U|424
8OVE|1|BA|A|425
8OVE|1|BA|G|426
*
8OVE|1|BA|C|433
8OVE|1|BA|G|434
8OVE|1|BA|A|435
8OVE|1|BA|A|436
8OVE|1|BA|A|437
8OVE|1|BA|G|438
*
8OVE|1|BC|C|20
8OVE|1|BC|U|21
8OVE|1|BC|U|22
8OVE|1|BC|G|23
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BC
- 5.8S rRNA
Nearby chains
- Chain BZ
- 60S ribosomal protein L26, putative
- Chain Bn
- Ribosomal protein L37
- Chain Bq
- 60S ribosomal protein L39, putative
- Chain Br
- 60S ribosomal protein L4
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