J3_8OVE_030
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUGAAAAGUAC*GAGUGACAUAGAACC*GA
- Length
- 28 nucleotides
- Bulged bases
- 8OVE|1|BA|U|469, 8OVE|1|BA|A|473
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_030 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.3812
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
8OVE|1|BA|U|440
8OVE|1|BA|U|441
8OVE|1|BA|G|442
8OVE|1|BA|A|443
8OVE|1|BA|A|444
8OVE|1|BA|A|445
8OVE|1|BA|A|446
8OVE|1|BA|G|447
8OVE|1|BA|U|448
8OVE|1|BA|A|449
8OVE|1|BA|C|450
*
8OVE|1|BA|G|461
8OVE|1|BA|A|462
8OVE|1|BA|G|463
8OVE|1|BA|U|464
8OVE|1|BA|G|465
8OVE|1|BA|A|466
8OVE|1|BA|C|467
8OVE|1|BA|A|468
8OVE|1|BA|U|469
8OVE|1|BA|A|470
8OVE|1|BA|G|471
8OVE|1|BA|A|472
8OVE|1|BA|A|473
8OVE|1|BA|C|474
8OVE|1|BA|C|475
*
8OVE|1|BC|G|18
8OVE|1|BC|A|19
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BC
- 5.8S rRNA
Nearby chains
- Chain BG
- Large subunit ribosomal RNA; LSU rRNA
- Chain BR
- 60S ribosomal protein L17, putative
- Chain BZ
- 60S ribosomal protein L26, putative
- Chain Bq
- 60S ribosomal protein L39, putative
- Chain Br
- 60S ribosomal protein L4
Coloring options: