J3_8OVE_034
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- (OMG)UC*GCC(A2M)GCGAUCC*(OMG)GUGUC
- Length
- 20 nucleotides
- Bulged bases
- 8OVE|1|BB|C|1203, 8OVE|1|BB|U|1251
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OVE|1|BB|OMG|1094
8OVE|1|BB|U|1095
8OVE|1|BB|C|1096
*
8OVE|1|BB|G|1198
8OVE|1|BB|C|1199
8OVE|1|BB|C|1200
8OVE|1|BB|A2M|1201
8OVE|1|BB|G|1202
8OVE|1|BB|C|1203
8OVE|1|BB|G|1204
8OVE|1|BB|A|1205
8OVE|1|BB|U|1206
8OVE|1|BB|C|1207
8OVE|1|BB|C|1208
*
8OVE|1|BB|OMG|1247
8OVE|1|BB|G|1248
8OVE|1|BB|U|1249
8OVE|1|BB|G|1250
8OVE|1|BB|U|1251
8OVE|1|BB|C|1252
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain AB
- E-SITE TRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BI
- 60S ribosomal protein L18
- Chain BU
- 60S ribosomal protein L21E, putative
- Chain Bb
- 60S ribosomal protein L27a
- Chain Bt
- 60S ribosomal protein L44
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