J3_8OVE_037
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUUGG*CGAGAU*GCAACA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OVE_037 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3582
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8OVE|1|AA|U|1688
8OVE|1|AA|U|1689
8OVE|1|AA|U|1690
8OVE|1|AA|U|1691
8OVE|1|AA|G|1692
8OVE|1|AA|G|1693
*
8OVE|1|AA|C|1732
8OVE|1|AA|G|1733
8OVE|1|AA|A|1734
8OVE|1|AA|G|1735
8OVE|1|AA|A|1736
8OVE|1|AA|U|1737
*
8OVE|1|AA|G|1886
8OVE|1|AA|C|1887
8OVE|1|AA|A|1888
8OVE|1|AA|A|1889
8OVE|1|AA|C|1890
8OVE|1|AA|A|1891
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A8
- Putative ribosomal protein S29
- Chain AK
- 40S ribosomal protein S16, putative
- Chain AL
- 40S ribosomal protein S17, putative
- Chain AP
- 40S ribosomal protein S2, putative
- Chain AQ
- Ribosomal protein S10
- Chain AX
- 40S ribosomal protein S3, putative
Coloring options: