J3_8OZ0_001

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OZ0_001 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.2067

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8OZ0|1|W|A|816
8OZ0|1|W|G|817
8OZ0|1|W|A|818
8OZ0|1|W|G|819
*
8OZ0|1|W|C|829
8OZ0|1|W|A|830
8OZ0|1|W|G|831
*
8OZ0|1|W|C|843
8OZ0|1|W|U|844
8OZ0|1|W|G|845
8OZ0|1|W|G|846
8OZ0|1|W|A|847
8OZ0|1|W|U|848

Current chains

Chain W

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S4, X isoform

Chain Z

40S ribosomal protein S9

Chain e

40S ribosomal protein S24