J3_8OZ0_002
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8OZ0|1|W|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8OZ0_002 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1196
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OZ0|1|W|A|938
8OZ0|1|W|U|939
8OZ0|1|W|U|940
8OZ0|1|W|C|941
*
8OZ0|1|W|G|985
8OZ0|1|W|G|986
8OZ0|1|W|A|987
8OZ0|1|W|C|988
8OZ0|1|W|C|989
8OZ0|1|W|A|990
8OZ0|1|W|G|991
8OZ0|1|W|A|992
8OZ0|1|W|G|993
*
8OZ0|1|W|C|1000
8OZ0|1|W|A|1001
8OZ0|1|W|U|1002
8OZ0|1|W|U|1003
8OZ0|1|W|U|1004
Current chains
- Chain W
- 18S rRNA
Nearby chains
- Chain P
- 40S ribosomal protein S3a
- Chain R
- 40S ribosomal protein S26
- Chain T
- 40S ribosomal protein S14
- Chain V
- 40S ribosomal protein S13
Coloring options: