J3_8OZ0_005

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUAAU(PSU)U*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

8OZ0|1|W|G|1256, 8OZ0|1|W|A|1258

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OZ0_005 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.1715

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8OZ0|1|W|C|1237
8OZ0|1|W|U|1238
8OZ0|1|W|U|1239
8OZ0|1|W|A|1240
8OZ0|1|W|A|1241
8OZ0|1|W|U|1242
8OZ0|1|W|PSU|1243
8OZ0|1|W|U|1244
*
8OZ0|1|W|G|1255
8OZ0|1|W|G|1256
8OZ0|1|W|G|1257
8OZ0|1|W|A|1258
8OZ0|1|W|A|1259
8OZ0|1|W|A|1260
8OZ0|1|W|C|1261
8OZ0|1|W|C|1262
8OZ0|1|W|U|1263
8OZ0|1|W|C|1264
8OZ0|1|W|A|1265
8OZ0|1|W|C|1266
*
8OZ0|1|W|G|1516
8OZ0|1|W|G|1517
8OZ0|1|W|C|1518
8OZ0|1|W|U|1519
8OZ0|1|W|G|1520

Current chains

Chain W

18S rRNA

Nearby chains

Chain G

Eukaryotic translation initiation factor 1A, X-chromosomal

Chain U

Eukaryotic translation initiation factor 2 subunit 2

Chain j

40S ribosomal protein S15

Chain n

Small ribosomal subunit protein uS13

Chain o

40S ribosomal protein S29

Chain w

40S ribosomal protein S20