J3_8P03_011
3D structure
- PDB id
- 8P03 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with m6A mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P03_011 not in the Motif Atlas
- Geometric match to J3_4V88_078
- Geometric discrepancy: 0.113
- The information below is about J3_4V88_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.1
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
8P03|1|2|A|40
8P03|1|2|G|41
*
8P03|1|2|C|471
8P03|1|2|G|472
8P03|1|2|C|473
8P03|1|2|A|474
8P03|1|2|A|475
8P03|1|2|A|476
8P03|1|2|U|477
*
8P03|1|2|A|502
8P03|1|2|G|503
8P03|1|2|U|504
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- 40S ribosomal protein S9
- Chain Z
- 40S ribosomal protein S23
- Chain k
- ATP binding cassette subfamily E member 1
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