J3_8P03_016

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P03_016 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1028

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8P03|1|2|U|1346
8P03|1|2|G|1347
*
8P03|1|2|U|1356
8P03|1|2|G|1357
8P03|1|2|U|1358
8P03|1|2|C|1359
*
8P03|1|2|G|1371
8P03|1|2|A|1372
8P03|1|2|U|1373
8P03|1|2|A|1374
8P03|1|2|A|1375

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein SA

Chain E

40S ribosomal protein S2

Chain T

40S ribosomal protein eS17