J3_8P09_008
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P09_008 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.4017
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8P09|1|2|U|1336
8P09|1|2|C|1337
8P09|1|2|U|1338
8P09|1|2|U|1339
8P09|1|2|A|1340
8P09|1|2|G|1341
*
8P09|1|2|C|1380
8P09|1|2|G|1381
8P09|1|2|A|1382
8P09|1|2|G|1383
8P09|1|2|A|1384
8P09|1|2|C|1385
*
8P09|1|2|G|1477
8P09|1|2|C|1478
8P09|1|2|A|1479
8P09|1|2|A|1480
8P09|1|2|U|1481
8P09|1|2|A|1482
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S2
- Chain F
- Ribosomal protein S3
- Chain S
- 40S ribosomal protein uS9
- Chain T
- 40S ribosomal protein eS17
- Chain W
- 40S ribosomal protein uS10
- Chain e
- 40S ribosomal protein S29
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