J3_8P09_012

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8P09|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P09_012 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0877

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8P09|1|2|A|40
8P09|1|2|G|41
8P09|1|2|A|42
8P09|1|2|U|43
8P09|1|2|U|44
8P09|1|2|A|45
8P09|1|2|A|46
8P09|1|2|G|47
*
8P09|1|2|C|469
8P09|1|2|G|470
8P09|1|2|C|471
8P09|1|2|G|472
8P09|1|2|C|473
8P09|1|2|A|474
8P09|1|2|A|475
8P09|1|2|A|476
8P09|1|2|U|477
*
8P09|1|2|A|502
8P09|1|2|G|503
8P09|1|2|U|504

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S9

Chain Z

40S ribosomal protein S23

Chain k

ATP binding cassette subfamily E member 1