J3_8P16_018

3D structure

PDB id

8P16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8P16|1|2|U|1240, 8P16|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P16_018 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1515

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8P16|1|2|C|1237
8P16|1|2|A|1238
8P16|1|2|A|1239
8P16|1|2|U|1240
8P16|1|2|G|1241
*
8P16|1|2|C|1296
8P16|1|2|G|1297
8P16|1|2|U|1298
8P16|1|2|A|1299
8P16|1|2|G|1300
8P16|1|2|U|1301
8P16|1|2|C|1302
8P16|1|2|C|1303
*
8P16|1|2|G|1334
8P16|1|2|U|1335
8P16|1|2|C|1336
8P16|1|2|G|1337

Current chains

Chain 2

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

Small ribosomal subunit protein uS13