3D structure

PDB id
8P16 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E167K RF2 on E. coli 70S release complex with UGG (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
8P16|1|1|U|34, 8P16|1|1|U|448, 8P16|1|1|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8P16_022 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0511
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

8P16|1|1|C|32
8P16|1|1|C|33
8P16|1|1|U|34
8P16|1|1|G|35
*
8P16|1|1|C|445
8P16|1|1|G|446
8P16|1|1|A|447
8P16|1|1|U|448
8P16|1|1|A|449
8P16|1|1|G|450
8P16|1|1|U|451
8P16|1|1|G|452
8P16|1|1|A|453
8P16|1|1|A|454
8P16|1|1|C|455
8P16|1|1|C|456
8P16|1|1|A|457
8P16|1|1|G|458
8P16|1|1|U|459
8P16|1|1|A|460
8P16|1|1|C|461
*
8P16|1|1|G|468
8P16|1|1|G|469
8P16|1|1|A|470
8P16|1|1|A|471
8P16|1|1|A|472
8P16|1|1|G|473

Current chains

Chain 1
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L4
Chain Q
50S ribosomal protein L20
Chain T
50S ribosomal protein L23
Chain d
50S ribosomal protein L34

Coloring options:


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