J3_8P17_036

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P17_036 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1259

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8P17|1|2|U|1073
8P17|1|2|G|1074
*
8P17|1|2|U|1083
8P17|1|2|G|1084
8P17|1|2|U|1085
8P17|1|2|U|1086
*
8P17|1|2|G|1099
8P17|1|2|C|1100
8P17|1|2|A|1101
8P17|1|2|A|1102

Current chains

Chain 2

16S RNA

Nearby chains

Chain g

Small ribosomal subunit protein uS2

Chain j

Small ribosomal subunit protein uS5

Chain z

Small ribosomal subunit protein bS21