3D structure

PDB id
8P18 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E167K RF2 on E. coli 70S release complex with UGG (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
8P18|1|2|A|975, 8P18|1|2|G|976
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8P18_013 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.0738
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8P18|1|2|U|955
8P18|1|2|U|956
8P18|1|2|U|957
8P18|1|2|A|958
8P18|1|2|A|959
8P18|1|2|U|960
8P18|1|2|U|961
8P18|1|2|C|962
*
8P18|1|2|G|973
8P18|1|2|A|974
8P18|1|2|A|975
8P18|1|2|G|976
8P18|1|2|A|977
8P18|1|2|A|978
8P18|1|2|C|979
8P18|1|2|C|980
8P18|1|2|U|981
8P18|1|2|U|982
8P18|1|2|A|983
8P18|1|2|C|984
*
8P18|1|2|G|1221
8P18|1|2|G|1222
8P18|1|2|C|1223
8P18|1|2|U|1224
8P18|1|2|A|1225

Current chains

Chain 2
16S rRNA

Nearby chains

Chain 6
Peptide chain release factor RF2
Chain n
Small ribosomal subunit protein uS9
Chain o
Small ribosomal subunit protein uS10
Chain r
Small ribosomal subunit protein uS13
Chain s
Small ribosomal subunit protein uS14
Chain x
Small ribosomal subunit protein uS19

Coloring options:


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