J3_8P18_018

3D structure

PDB id

8P18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8P18|1|2|U|1240, 8P18|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P18_018 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1468

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8P18|1|2|C|1237
8P18|1|2|A|1238
8P18|1|2|A|1239
8P18|1|2|U|1240
8P18|1|2|G|1241
*
8P18|1|2|C|1296
8P18|1|2|G|1297
8P18|1|2|U|1298
8P18|1|2|A|1299
8P18|1|2|G|1300
8P18|1|2|U|1301
8P18|1|2|C|1302
8P18|1|2|C|1303
*
8P18|1|2|G|1334
8P18|1|2|U|1335
8P18|1|2|C|1336
8P18|1|2|G|1337

Current chains

Chain 2

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

Small ribosomal subunit protein uS13